PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5NG202900.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 299aa    MW: 30965.7 Da    PI: 9.7676
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5NG202900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.29.1e-06196236954
                          HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           r RR+r+ +++  L++l+P        +++ a++L +A  Y+k L
  Pavir.5NG202900.1.p 196 ARLRRERVSERLRVLQRLVPGG-----SRMDTASMLDEAASYLKFL 236
                          599*****************95.....5****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.215187236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-12193248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.8E-11193242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.58E-10193241No hitNo description
Gene3DG3DSA:4.10.280.105.2E-9193247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MGLDTADVLP SVVAGAAEDS LLDPFVYAPN VVAVAEEPAQ TPASNTAFSG YSGSTTGGGG  60
NGNISSGESN TCGSGGGYDT DVASPCAVSR TALLQTTAVV PPSKRKLGNE PPRRRRRRPA  120
SRSRGGASTS MPQEGPPPAG YEPDSEAIAQ VKEMIYRAAA MRPVHQLVCG AAEPPSQTRP  180
RRKNVRISSD PQTVAARLRR ERVSERLRVL QRLVPGGSRM DTASMLDEAA SYLKFLKSQL  240
KALERANPSN GSLLQSYTGG LGGGATSAGT VLAFGRESAI GGYVKSNRDI STCGVSDI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1103117KRKLGNEPPRRRRRR
2111118PRRRRRRP
3112117RRRRRR
4178182RPRRK
5196201RLRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0658891e-130BT065889.1 Zea mays full-length cDNA clone ZM_BFc0179C07 mRNA, complete cds.
GenBankBT0663021e-130BT066302.1 Zea mays full-length cDNA clone ZM_BFc0192A04 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961359.11e-123PREDICTED: transcription factor bHLH122-like
TrEMBLK3Z6V51e-123K3Z6V5_SETIT; Uncharacterized protein
STRINGSi022274m1e-123(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP154637106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.16e-28bHLH family protein